publications
publications by categories in reversed chronological order. generated by jekyll-scholar.
2024
- BioinfAdvancing entity recognition in biomedicine via instruction tuning of large language modelsBioinformatics, 2024
- JBIFedFSA: Hybrid and federated framework for functional status ascertainment across institutionsJournal of Biomedical Informatics, 2024
- JAMIAEnsemble pretrained language models to extract biomedical knowledge from literatureJournal of the American Medical Informatics Association, 2024
- JAMIAImproving large language models for clinical named entity recognition via prompt engineeringJournal of the American Medical Informatics Association, 2024
2023
- BIBMUsing annotation for computerized support for fast skimming of cardiology electronic health record notesIn 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) , 2023
- BioinfTowards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approachBioinformatics, 2023
- arXivLarge language models in biomedical natural language processing: benchmarks, baselines, and recommendationsarXiv preprint arXiv:2305.16326, 2023
- AMIAIntegrating Commercial and Social Determinants of Health: A Unified Ontology for Non-Clinical Determinants of Health2023
- JAMIASystematic design and data-driven evaluation of social determinants of health ontology (SDoHO)Journal of the American Medical Informatics Association, 2023
- JBIRepresenting and utilizing clinical textual data for real world studies: An OHDSI approachJournal of Biomedical Informatics, 2023
- BMCMining of EHR for interface terminology concepts for annotating EHRs of COVID patientsBMC Medical Informatics and Decision Making, 2023
2022
- Conversational bots for psychotherapy: A study of generative transformer models using domain-specific dialoguesIn Proceedings of the 21st Workshop on Biomedical Language Processing , 2022
2021
- JBIVisual comprehension and orientation into the COVID-19 CIDO ontologyJournal of Biomedical Informatics, 2021
- ThesisMethods for Extending Biomedical Reference Ontologies and Interface Terminologies for EHR Text AnnotationNew Jersey Institute of Technology , 2021
2020
- BIBMGenerating training data for concept-mining for an ‘interface terminology’annotating cardiology EHRsIn 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) , 2020
- BigDataMining concepts for a COVID interface terminology for annotation of EHRsIn 2020 IEEE International Conference on Big Data (Big Data) , 2020
- BMCOutlier concepts auditing methodology for a large family of biomedical ontologiesBMC Medical Informatics and Decision Making, 2020
- BMCExtending import detection algorithms for concept import from two to three biomedical terminologiesBMC medical informatics and decision making, 2020
- JAMIAA review of auditing techniques for the Unified Medical Language SystemJournal of the American Medical Informatics Association, 2020
2019
- JBIAlternative classification of identical concepts in different terminologies: different ways to view the worldJournal of biomedical informatics, 2019
- KEODMeasuring and Avoiding Information Loss During Concept Import from a Source to a Target Ontology.In KEOD , 2019
2018
- BIBMExtended analysis of topological-pattern-based ontology enrichmentIn 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) , 2018
- AMIALeveraging horizontal density differences between ontologies to identify missing child concepts: a proof of conceptIn AMIA Annual Symposium Proceedings , 2018
- AMIA